Publications
Year 2024
- Wisanpitayakorn, P., Sartyoungkul, S., Kurilung, A., Sirivatanauksorn, Y., Visessanguan, W., Sathirapongsasuti, N., & Khoomrung, S (2024) Accurate Prediction of Ion Mobility Collision Cross-Section Using Ion’s Polarizability and Molecular Mass with Limited Data. Journal of Chemical Information and Modeling.
- Weerawan Manokasemsan, Narumol Jariyasopit, Patcha Poungsombat, Khwanta Kaewnarin, Kwanjeera Wanichthanarak, Alongkorn Kurilung, Kassaporn Duangkumpha, Suphitcha Limjiasahapong, Yotsawat Pomyen, Roongruedee Chaiteerakij, Rossarin Tansawa, Chatchawan Srisawat, Yongyut Sirivatanauksorn, Vorapan Sirivatanauksorn, Sakda Khoomrung (2024) Quantifying fecal and plasma short-chain fatty acids in healthy Thai individuals. Computational and Structural Biotechnology Journal.
- Vannabhum M., Ziangchin N., Thepnorarat P., Akarasereenont P Metabolomic analysis of Thai Herbal Analgesic Formula based on ultra-high-performance liquid chromatography-quadrupole time-of-flight mass spectrometry. Heliyon.
- Kwanjeera Wanichthanarak, Ammarin In-on, Sili Fan, Oliver Fiehn, Arporn Wangwiwatsin and Sakda Khoomrung (2024) Data processing solutions to render metabolomics more quantitative: case studies in food and clinical metabolomics using Metabox 2.0. GigaScience.
- Pannawich Boonciew, Watcharee Saisongkorh, Suppalak Brameld, Matsaya Thongpin, Alongkorn Kurilung, Pratomporn Krangvichian, Waree Niyomtham, Kanitha Patarakul,Thanmaporn Phichitraslip, David J. Hampson and Nuvee Prapasarakul (2024) Improved Antibody Detection for Canine Leptospirosis: ELISAs Modified Using Local Leptospiral Serovar Isolates from Asymptomatic Dogs. Animals.
- Pravit Akarasereenont, Saracha Pattanapholkornsakul, Suveerawan Limsuvan, Dollaporn Mamaethong, Suksalin Booranasubkajorn, Narawut Pakaprot, Pinpat Tripatara, Kajee Pilakasiri (2024) Therapeutic potential of Thai herbal formula for cognitive impairment: A metabolomics approach for Comprehensive Insights. Heliyon.
- Sanya Sureram, Nopporn Chutiwitoonchai, Tam Pooprasert, Watchara Sangsopha,Suphitcha Limjiasahapong, Narumol Jariyasopit, Yongyut Sirivatanauksorn, Sakda Khoomrung, Chulabhorn Mahidol, Somsak Ruchirawat, Prasat Kittakoop (2024) Discovery of procyanidin condensed tannins of (− )-epicatechin from Kratom, Mitragyna speciosa, as virucidal agents against SARS-CoV-2. International Journal of Biological Macromolecules.
Year 2023
- Vannabhum M., Ziangchin N., Thepnorarat P., Akarasereenont P Metabolomic analysis of Thai Herbal Analgesic Formula based on ultra-high-performance liquid chromatography-quadrupole time-of-flight mass spectrometry. Heliyon.
- Vannabhum M, Mahajaroensiri S, Pattanapholkornsakul S, Tantiwongsekunakorn A, Thippayacharoentam T, Tripatara T, and Akarasereenont P (2023) Metabolomics of Personalized Body Elements in Thai Traditional Medicine Response to Herbal Medicine for Body Elements Balancing in Healthy Volunteers. Evidence-based Complementary and Alternative Medicine.
- Jariyasopit, N., & Khoomrung, S Mass spectrometry-based analysis of gut microbial metabolites of aromatic amino acids. Computational and Structural.
- Alongkorn Kurilung, Suphitcha Limjiasahapong, Khwanta Kaewnarin, Pattipong Wisanpitayakorn, Narumol Jariyasopit, Kwanjeera Wanichthanarak, Sitanan Sartyoungkul, Stephen Choong Chee Wong, Nuankanya Sathirapongsasuti, Chagriya Kitiyakara, Yongyut Sirivatanauksorn, Sakda Khoomrung (2023) Measurement of very low-molecular weight metabolites by traveling wave ion mobility and its use in human urine samples. Journal of Pharmaceutical Analysis.
- Thongkongkaew T, Jariyasopit N, Khoomrung S, Siritutsoontorn S, Jitrapakdee S, Kittakoop P, Somsak Ruchirawat S (2023) Anti-Xanthine Oxidase Inhibitors, 5´-Hydroxyhericenes A-D, from the Edible Mushroom Hericium erinaceus and Structure Revision of 3-[2,3-Dihydroxy-4-(hydroxymethyl)tetrahydrofuran-1-yl]-pyridine-4,5-diol. ACS Omega.
- Suta S, Ophakas S, Manosan T, Honwichit O, Suvimol Charoensiddhi, Apinya Surawit, Pongkunakorn T, Pumeiam S, Mongkolsucharitkul P, Pinsawas B, Sutheeworapong S, Puangsombat P, Khoomrung S, Mayurasakorn K (2023) Influence of Prolonged Whole Egg Supplementation on Insulin-like Growth Factor 1 and Short-Chain Fatty Acids Product. Nutrients.
- Sophida Suta, Apinya Surawit, Pichanun Mongkolsucharitkul, Bonggochpass Pinsawas, Thamonwan Manosan, Suphawan Ophakas, Tanyaporn Pongkunakorn, Sureeporn Pumeiam, Kitti Sranacharoenpong, Sawannee Sutheeworapong, Patcha Poungsombat, Sakda Khoomrung, Pravit Akarasereenont, Iyarit Thaipisuttikul, Bhoom Suktitipat and Korapat Mayurasakorn (2023) Prolonged Egg Supplement Advances Growing Child’s Growth and Gut Microbiota. Nutrients.
- Mathema V. B., Sen P., Lamichhane S., Orešič M., Khoomrung S. (2023) Deep learning facilitates multi-data type analysis and predictive biomarker discovery in cancer precision medicine. Computational and Structural Biotechnology Journal.
- Wanichthanarak K. , Nookaew I., Pasookhush P., Wongsurawat T., Jenjaroenpun P., Leeratsuwan N., Wattanachaisaereekul S., Visessanguan W., Sirivatanauksorn Y., Nuntasaen N., Kuhakarn C., Reutrakul V., Ajawatanawong P. and Khoomrung S. (2023) Revisiting chloroplast genomic landscape and annotation towards comparative chloroplast genomes of Rhamnaceae. BMC Plant Biology.
Year 2022
- Narumol Jariyasopit, Suphitcha Limjiasahapong, Alongkorn Kurilung, Sitanan Sartyoungkul, Pattipong Wisanpitayakorn, Narong Nuntasaen, Chutima Kuhakarn, Vichai Reutrakul, Prasat Kittakoop, Yongyut Sirivatanauksorn, and Sakda Khoomrung* (2022) Traveling Wave Ion Mobility-Derived Collision Cross Section Database for Plant Specialized Metabolites: An Application to Ventilago harmandiana Pierre. Journal of Proteome Research.
- Indrati N., Phonsatta N., Poungsombat P., Khoomrung S., Sumpavapol P. and Panya A. (2022) Metabolic profiles alteration of Southern Thailand traditional sweet pickled mango during the production process. Frontiers in Nutrition.
- Duangkumpha, K., Jariyasopit, N., Wanichthanarak, k., Dhakal, E., Wisanpitayakorn, P.,Thotsiri S., Sirivatanauksorn Y., Kitiyakara C., Sathirapongsasuti N., Khoomrung S. (2022) GCxGC-TOFMS Metabolomics Analysis Identifies Elevated Levels of Plasma Sugars and Sugar Alcohols in Diabetic Mellitus Patients with Kidney Failure. Journal of Biological Chemistry.
- Chatchawan Srisawat , Rattana Pipitpreecha , Weerawadee Chandranipapongse , Piyapat Pongnarin , Supornchai Kongpatanakul , Apirom Laocharoenkiat , Orathai Jirapongsananuruk , Nualanong Visitsuntorn , Pakit Vichyanond (2022) Systemic absorption of epinephrine compared between the intranasal and intramuscular routes of administration in healthy adults. Asian Pacific Journal of Allergy and Immunology (2022)
- Nathita Phumthanakorn, Thidathip Wongsurawat, Piroon Jenjaroenpun, Alongkorn Kurilung, Nuvee Prapasarakul. (2022) Novel Organization of the Staphylococcal Cassette Chromosome mec Composite Island in Clinical Staphylococcus haemolyticus and Staphylococcus hominis Subspecies hominis Isolates from Dogs. American Society for Microbiology.
- Wisanpitayakorn, P., Mickolajczyk, K. J., Hancock, W. O., Vidali, L., Tüzel, E. (2022) Measurement of the persistence length of cytoskeletal filaments using curvature distributions. Biophysical Journal.
- Patchaya Pantharosa, Panisara Sukcharoen, Rattana Phadungrakwittaya, Pravit Akarasereenon, Suksalin Booranasubkajorn, NatchagornLumlerdkij (2022) Utilization of UPLC-PDA and GC–MS/MS coupled with metabolomics analysis to identify bioactive metabolites in medicinal turmeric at different ages for the quality assurance. Phytomedicine.
- Indrati, N., Sumpavapol, P., Samakradhamrongthai, R.S., Phonsatta, N., Poungsombat, P., Khoomrung, S., Panya, A. (2022) Volatile and non-volatile compound profiles of commercial sweet pickled mango and its correlation with consumer preference. International journal of Food Science and Technology
- Mathema, V.B., Duangkumpha, K., Wanichthanarak, K., Jariyasopit, N., Dhakal, E., Sathirapongsasuti, N., Kitiyakara, C., Sirivatanauksorn, Y., Khoomrung, S. (2022) CRISP: a deep learning architecture for GCxGC- TOFMS contour ROI identification, simulation and analysis in imaging metabolomics. Briefings in Bioinformatics.
Year 2021
- Anekthanakul, K., Manocheewa, S., Chienwichai, K., Poungsombat, P., Limjiasahapong, S., Wanichthanarak, K., Jariyasopit, N., Mathema,V.B. , Kuhakarn, C., Reutrakul, V.,Phetcharaburanin, J., Panya, A., Phonsatta , N., Visessanguan, W., Pomyen, Y., Sirivatanauksorn, Y., Worawichawong, S., Sathirapongsasuti, N., Kitiyakara, C., and Khoomrung, S*. (2021) Predicting Lupus Membranous Nephritis using Reduced Picolinic Acid to Tryptophan Ratio as a Urinary Biomarker. iScience
- Halappanavara, S., Wu, D., Boyadzhieva, A., Solorio-Rodriguez, A., Williams, A., Jariyasopit, N., Saini, A., and Harner, T. (2021) Toxicity screening of air extracts representing different source sectors in the Greater Toronto and Hamilton areas: In vitro oxidative stress, pro-inflammatory response, and toxicogenomic analysis. Mutation Research/Genetic Toxicology and Environmental Mutagenesis.
- Kaewnarin, K., Limjiasahapong, N., Jariyasopit, N., Anekthanakul, K., Kurilung, A.,, Choong Chee Wong, S., Sirivatanauksorn, Y., Visessanguan, W., and Khoomrung, S.* (2021) High-Resolution QTOF-MRM for Highly Accurate Identification and Quantification of Trace Levels of Triterpenoids in Ganoderma lucidum Mycelium. American Society for Mass Spectrometry.
- Vasiljevic, T., Jariyasopit, N., Schuster, J.K., and Harner, T. (2021) Insights into sources and occurrence of oxy- and nitro-PAHs in the alberta oil sands region using a network of passive air samplers. Environmental Pollution.
- Jariyasopit, N., Harner, T., Shin, C., and Park, R. (2021) The Effects of Plume Episodes on PAC Profiles in the Athabasca Oil Sands Region. Environmental Pollution.
- Limjiasahapong, S., Kaewnarin, K., Jariyasopit, N., Hongthong, S., Nuntasaene, N., Robinson, J.L., Nookaew, I., Sirivatanauksorn, Y., Kuhakarn, C., Reutrakul, V., and Khoomrung, S.* (2021) UPLC-ESI-MRM for absolute quantification and MS/MS structural elucidation of six specialized pyranonaphthoquinone metabolites from Ventilago harmandiana. Frontiers in Plant Science. 11:2038.
Year 2020
- Jariyasopit, N., Khamsaeng,S., Panya, A., Vinaisuratern, P., Metem, P., Asawalertpanich, W., Visessanguan, W., Sirivatanauksorn, V., and Khoomrung, S.*(2021) Quantitative Analysis of Nutrient Metabolite Compositions of Retail Cow’s Milk and Milk Alternatives in Thailand Using GC-MS. Journal of Food Composition and Analysis
- Thitisaksakul,M., Sangwongchai, W., Mungmonsin, U., Promrit, P., Krusong, K., Wanichthanarak, K. , Tananuwong, K. (2020) Granule morphological and structural variability of Thai certified glutinous rice starches in relation to thermal, pasting, and digestible properties. Cereal Chemistry.
- Kwanjeera Wanichthanarak and Maysaya Thitisaksaku (2020) ThRSDB: a database of Thai rice starch composition, molecular structure and functionality. Database: The Journal of Biological Databases and Curation
- Kessiri Kongmanas, Nuntaya Punyadee, Kasima Wasuworawong, Adisak Songjaeng, Tanapan Prommool, Yongyut Pewkliang, Siriphan Manocheewa, Somchai Thiemmeca, Khanit Sa-ngiamsuntorn, Chunya Puttikhunt, Kym Francis Faull, Suradej Hongeng, Panisadee Avirutnan (2020) Immortalized stem cell- derived hepatocytelike cells: An alternative model for studying dengue pathogenesis and therapy. PLOS Neglected Tropical Diseases
- Winayanuwattikun, W., Varothai, S., Tuchinda, P., Kulthanan, K., Prasertworonun, N., Dasri, P., Wanichthanarak, K. , Akarasereenont, P. (2020) A double-blinded, randomized, split-side, vehicle-controlled study of the efficacy of cleanser containing Acanthus ebracteatus Vahl., Suregada multiflora, and Acacia concinna in patients with atopic dermatitis: A pilot study. Asian Pacific Journal of Allergy and Immunology
- Wanichthanarak, K.,Boonchai, C., Kojonna, T., Chadchawan, S., Sangwongchai, W., Thitisaksakul, M. (2020) Deciphering rice metabolic flux reprograming under salinity stress via in silico metabolic modeling. Computational and Structural Biotechnology Journal
- Pomyen, Y., Wanichthanarak, K., Poungsombat, P., Fahrmann, J., Grapov, D., and Khoomrung., S.* (2020) Deep Metabolome: Applications of deep learning in metabolomics. Computational and Structural Biotechnology Journal
- Sen, P., Lamichhane, S., Mathema, V.B., McGlinchey, A., Dickens, A.M., Khoomrung, S., Orešič, M. (2020) Deep learning meets metabolomics: a methodological perspective. Briefings in Bioinformatics
- Amandeep Saini, *, Tom Harner, Sita Chinnadhurai, Jasmin K. Schuster, Alan Yates, Andrew Sweetman, Beatriz H. Aristizabal-Zuluaga, Bego~na Jim[1]enez, Carlos A. Manzano, Eftade O. Gaga, Gavin Stevenson, Jerzy Falandysz, Jianmin Ma, Karina S.B. Miglioranza, Kurunthachalam Kannan , Maria Tominaga, Narumol Jariyasopit, Nestor Y. Rojas, Omar Amador-Mu~noz, Ravindra Sinha, Rose Alani, R. Suresh, Takahiro Nishino, Tamer Shoeib (2020) GAPS-megacities: A new global platform for investigating persistent organic pollutants and chemicals of emerging concern in urban air. Environmental Pollution
- Leena Chularojanamontri,Chanisada Wongpraparut,Narumol Silpa-Archa,Chayada Chaiyabutr,Chutipon Pruksaeakanan,Anchalika Klinniyom,Sarawut Junnu & Chatchawan Srisawat (2020) Patient-ready syringes containing 25 mg/mL methotrexate can be kept at temperature ranging from 4 °C to 37 °C for up to 12 weeks for use in psoriatic and rheumatologic conditions. Journal of Dermatological Treatment
- Kenneth Hodge, Jiradej Makjaroen, Jonathan Robinson, Sakda Khoomrung, and Trairak Pisitkun (2020) Deep Proteomic Deconvolution of Interferons and HBV Transfection Effects on a Hepatoblastoma Cell Line. ACS Omega
Year 2019
- Liu, Y., Liu, Q., Krivoruchko, A., Khoomrung, S., Nielsen, J. (2019) Engineering yeast phospholipid metabolism for de novo oleoylethanolamide production. Nature Chemical Biology
- Khoomrung, S., Nookaew, I. , Sen ,P., Olafsdottir, T.A., Persson, J., Moritz, T., Andersen, P., Harandi, A.M., Nielsen, J. (2019) Metabolic profiling and compound-class identification reveal alterations in serum triglyceride levels in mice immunized with human vaccine adjuvant Alum. Journal of Proteome Research
- TANAWAN KONGMALAI, LUKANA PREECHASUK, SARAWUT JUNNU, SIRIPHAN MANOCHEEWA, CHATCHAWAN SRISAWAT and APIRADEE SRIWIJITKAMOL (2019) The Effect of Temperature on the Stability of In-Use Insulin Pens Experimental and Clinical. Endocrinology and Diabetes
- Gaga, E.E., Harner, T., Dabek-Zlotorzynska, E., Celo, V., Evans, G.J., Jeong, C.H., Halappanavar, S., Jariyasopit, N. and Su, Y. (2019) Polyurethane Foam (PUF) Disk Samplers for Measuring Trace Metals in Ambient Air. Environmental Science & Technology Letters.
- Nyunt T, Britton M, Wanichthanarak K , Budamagunta M, Voss JC, Wilson DW, Rutledge JC, Aung HH.(2019) Mitochondrial oxidative stress-induced transcript variants of ATF3 mediate lipotoxic brain microvascular injury. Free Radical Biology and Medicine. 143:25-46
- Jariyasopit N, Tung P, Su K,Halappanavar S,Evans G. J, Su Y, Khoomrung S, Harner M.(2019) Polycyclic aromatic compounds in urban air and associated inhalation cancer risks: A case study targeting distinct source sectors. Environmental Pollution.
- Jeennor S, Anantayanon J, Panchanawaporn S, Khoomrung S, Chutrakula C, Laoteng K.(2019) Reengineering lipid biosynthetic pathways of Aspergillus oryzae for enhanced production of γ-linolenic acid and dihomo-γ-linolenic acid. Gene.706:106-114.
- Wanichthanarakab K, Jeamsripongc S, Pornputtapongde N, Khoomrung S*. (2019) Accounting for biological variation with linear mixed-effects modelling improves the quality of clinical metabolomics data. Computational and Structural Biotechnology Journal.17:611-618.
Year 2018
- Guo Z, Khoomrung S, Nielsen J, Olsson L. (2018) Changes in lipid metabolism convey acid tolerance in Saccharomyces cerevisiae. Biotechnol Biofuels. 11 (1):297.
- Grapov D, Fahrmann J, Wanichthanarak K, Khoomrung S. (2018) Rise of Deep Learning for Genomic, Proteomic, and Metabolomic Data Integration in Precision Medicine. OMICS. 22: 1-7.
Year 2017
- Rodriguez A, Chen Y, Khoomrung S, Özdemir E, Borodina I, Nielsen J. (2017) Comparison of the metabolic response to over-production of p-coumaric acid in two yeast strains. Metabolic Engineering. 44: 256-272
- Khoomrung S, Wanichthanarak K, Nookaew I, Thamsermsang O, Seubnooch P, Laohapand T, Akarasereenont P. (2017) Metabolomics and integrative omics for the development of Thai traditional medicine. Front. Pharmacol. 8: 474.
* = Corresponding author